PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000071.1_g00053.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 174aa    MW: 19329.5 Da    PI: 7.9629
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000071.1_g00053.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002426123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             +kC +C++ F +   L  H+r+H
  Itr_sc000071.1_g00053.1  4 HKCRICSRNFANGRALGGHMRSH 26
                             79********************9 PP

2zf-C2H213.10.0002987109123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C k+F++   L  H  +H
  Itr_sc000071.1_g00053.1  87 YRCESCRKVFRSYQALGGHRASH 109
                              9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.4E-6426IPR007087Zinc finger, C2H2
PROSITE profilePS501579.702426IPR007087Zinc finger, C2H2
SMARTSM003550.069426IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.52E-9426No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.52E-982109No hitNo description
PfamPF139122.3E-1087111IPR007087Zinc finger, C2H2
SMARTSM003550.1587109IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6687109IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SuperFamilySSF576673.73E-6133165No hitNo description
PfamPF139123.2E-10137159IPR007087Zinc finger, C2H2
SMARTSM003551.4137159IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.016137159IPR007087Zinc finger, C2H2
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MEEHKCRICS RNFANGRALG GHMRSHVWNP YMQSAGAGDS ETESSVSDNS PEEDGAYCLM  60
MLSRDKWNTD EKSSGEVKKT ANGKRKYRCE SCRKVFRSYQ ALGGHRASHK KIVVKGLCDD  120
EEENVGENNG DVEEKLHECP FCYRLFSSGQ ALGGHKRSHF TAASSACLLS PSTK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347910.13e-44PREDICTED: zinc finger protein ZAT9-like
SwissprotQ9M2022e-33ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A0V0HXT24e-44A0A0V0HXT2_SOLCH; Putative zinc finger protein ZAT9-like (Fragment)
STRINGPGSC0003DMT4000669391e-43(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-32C2H2-like zinc finger protein